We have a DNA data manipulation package which has been written for us in an evolutionary process, by an expert Elance programmer. Unfortunately the programmer can no longer commit the time we need to further maintenance and further development of the package. The current size of this package is 260KB
We require a piece of software to filter very large DNA sequence data sets for duplicates. The software will run under an Ubuntu Linux environment and take full advantage of multi-threading capabilities. A graphical user interface is not required, but speed and accuracy of processing are important.
We invite the programmer to suggest an appropriat...
Per Vanessa's description, provide following enhancements to fastqkit:
(1) Integrate "SBLconvert" functionality into fastqkit. Add support to fastqkit for the Illumina format, with format assumed by extension (FASTQ: .fastq, ILLUMINA: .txt). Also add a commandline switch to allow format to be specified, over-riding default behaviour.
What I need or require:
Someone to develop the first two of a range of Python utilities for manipulating text data from DNA sequencers. These are standalone workstation apps, not web apps.
What I already have versus what the provider will deliver:
Rapid turnarround of relatively simple utilities, well documented, well tested for a non-profit ...
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